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2024-04-18 21:04:03

Gene list

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Organism: Plasmid pB3

Number of genes found: 119

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Plasmid pB3
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA conserved hypothetical proteinpB3 CDS31958 288 + 0.607639
NA pB3 repeat_region21294 5385 + 0.569174
NA pB3 repeat_unit33285 5 + 0.6
NA pB3 repeat_unit29098 7 + 0.714286
NA pB3 repeat_region18918 114 + 0.570175
NA pB3 repeat_unit32257 25 + 0.44
NA pB3 repeat_unit26679 8 + 0.5
NA pB3 repeat_region21294 820 + 0.52439
NA pB3 repeat_unit19027 5 + 0.2
NA pB3 repeat_unit32380 14 + 0.5
NA pB3 repeat_unit27612 7 + 0.714286
NA pB3 repeat_unit30017 7 + 0.285714
NA pB3 repeat_unit20863 5 + 0.6
NA pB3 repeat_unit19032 23 + 0.521739
NA pB3 repeat_region33415 5 + 0.2
NA pB3 repeat_unit33246 14 + 0.5
NA pB3 repeat_region20868 12417 + 0.572924
NA pB3 repeat_unit33260 25 + 0.44
NA pB3 repeat_region32282 98 + 0.479592
NA pB3 repeat_region32380 880 + 0.605682
NA pB3 repeat_region20024 61 + 0.639344
NA putative acetyltransferase; hypothetical proteinpB3 CDS31434 501 + 0.650699
NA pB3 repeat_region33285 105 + 0.6
NA pB3 repeat_unit20868 25 + 0.52
NA pB3 repeat_unit26665 14 + 0.5
NA pB3 repeat_region19032 14383 + 0.571091
NA pB3 repeat_unit21294 14 + 0.5
NA pB3 repeat_unit20717 30 + 0.4
NA pB3 repeat_unit25859 14 + 0.5
NA pB3 repeat_unit29964 7 + 0.428571
NA pB3 repeat_unit22100 14 + 0.5
NA pB3 repeat_region19055 86 + 0.604651
NA pB3 repeat_unit21286 8 + 0.5
NA pB3 repeat_unit29161 7 + 0.428571
NA pB3 repeat_region25859 820 + 0.52439
NA pB3 repeat_unit33390 25 + 0.52
'intI1 pB3 pseudo21070 222 - 0.612613
aadA2 streptomycin 3''-adenyltransferasepB3 CDS29171 792 + 0.518939
cmlA1 pB3 sig_peptide27819 135 + 0.511111
cmlA1 chloramphenicol efflux protein precursorpB3 CDS27819 1260 + 0.556349
cmlA1 chloramphenicol efflux proteinpB3 mat_peptide27954 1122 + 0.562389
incC1 IncC1 partitioning proteinpB3 CDS51354 1077 - 0.638812
incC2 IncC2 inclusion membrane proteinpB3 CDS51354 765 - 0.64183
intI1' pB3 pseudo26679 798 - 0.609023
kfrA KfrA proteinpB3 CDS49098 1032 - 0.75
klcA KlcA proteinpB3 CDS55739 429 - 0.689977
klcB KlcB proteinpB3 CDS54479 1209 - 0.705542
klcC (korC) KorC proteinpB3 CDS54205 258 - 0.693798
kleA KleA proteinpB3 CDS53811 237 - 0.624473
kleB KleB proteinpB3 CDS53537 216 - 0.62963
kleE KleE proteinpB3 CDS53063 387 - 0.630491
kleF KleF proteinpB3 CDS52531 531 - 0.691149
korA transcriptional repressor KorApB3 CDS52115 303 - 0.630363
korB KorB DNA binding proteinpB3 CDS50308 1050 - 0.671429
nps-1 beta-lactamase LCR-1 precursorpB3 CDS19208 783 + 0.514687
parA plasmid stablization protein ParA, resolvasepB3 CDS18099 660 - 0.684848
qacEdelta1 qacEdelta1 quaternary ammonium-compound resistance proteinpB3 CDS30126 348 + 0.5
ssb single strand DNA binding proteinpB3 CDS2760 342 - 0.593567
sul1 Sul1 dihydropteroate synthasepB3 CDS30467 840 + 0.616667
tetA(C) tetracycline efflux protein (class C)pB3 CDS23147 1191 - 0.61461
tetR tetracyclin repressor proteinpB3 CDS24430 660 + 0.590909
tniC putative TniC resolvasepB3 CDS20085 624 - 0.629808
tnpA IS6100 transposasepB3 CDS32411 795 + 0.610063
tnpA (IS26) TnpA transposasepB3 CDS21357 705 + 0.531915
tnpA (IS26, second copy) TnpA transposasepB3 CDS25922 705 + 0.531915
traC TraC primasepB3 CDS33827 4347 - 0.68438
traD TraD proteinpB3 CDS38177 390 - 0.723077
traE DNA topoisomerasepB3 CDS38588 2064 - 0.67345
traF TraF maturation peptidase precursorpB3 CDS40664 537 - 0.662942
traF TraF maturation peptidasepB3 mat_peptide40667 452 - 0.654867
traF pB3 sig_peptide41117 84 - 0.72619
traG DNA transport protein precursorpB3 CDS41197 1914 - 0.664054
traG pB3 sig_peptide42997 114 - 0.657895
traG DNA transport proteinpB3 mat_peptide41200 1797 - 0.664997
traH TraH proteinpB3 CDS43409 393 - 0.671756
traI TraI DNA-relaxasepB3 CDS43107 2241 - 0.66622
traJ oriT binding protein TraJpB3 CDS45382 375 - 0.669333
traK oriT binding protein TraKpB3 CDS46131 399 + 0.629073
traL TraL origin of transfer (oriT) proteinpB3 CDS46529 726 + 0.625344
traM TraM proteinpB3 CDS47254 441 + 0.671202
traN TraN proteinpB3 CDS47897 660 - 0.687879
traO TraO proteinpB3 CDS48579 348 - 0.58908
trbA TrbA regulator proteinpB3 CDS3215 363 + 0.586777
trbB TrbB secretion system proteinpB3 CDS3885 966 + 0.595238
trbC TrbC conjugal transfer protein precursorpB3 CDS4864 465 + 0.655914
trbC TrbC conjugal transfer proteinpB3 mat_peptide4972 354 + 0.669492
trbC pB3 sig_peptide4864 108 + 0.62963
trbD TrbD conjugal transfer proteinpB3 CDS5332 312 + 0.634615
trbE TrbE conjugal transfer proteinpB3 mat_peptide5718 2478 + 0.642857
trbE pB3 sig_peptide5640 78 + 0.551282
trbE TrbE conjugal transfer protein precursorpB3 CDS5640 2559 + 0.639703
trbF TrbF conjugal transfer proteinpB3 CDS8195 783 + 0.660281
trbG pB3 sig_peptide8995 66 + 0.636364
trbG TrbG conjugal transfer protein precursorpB3 CDS8995 900 + 0.638889
trbG TrbG conjugal transfer proteinpB3 mat_peptide9060 832 + 0.640625
trbH TrbH conjugal transfer protein precursorpB3 CDS9891 495 + 0.709091
trbH pB3 sig_peptide9891 99 + 0.686869
trbH TrbH conjugal transfer proteinpB3 mat_peptide9990 393 + 0.717557
trbI TrbI conjugal transfer proteinpB3 CDS10390 1422 + 0.677215
trbJ TrbJ conjugal transfer/entry exclusion proteinpB3 mat_peptide11913 681 + 0.61674
trbJ TrbJ conjugal transfer/entry exclusion protein precursorpB3 CDS11832 765 + 0.606536
trbJ pB3 sig_peptide11832 81 + 0.54321
trbK TrbK entry exclusion protein precursorpB3 CDS12606 228 + 0.627193
trbK pB3 sig_peptide12606 87 + 0.666667
trbK TrbK entry exclusion proteinpB3 mat_peptide12693 138 + 0.608696
trbL TrbL plasmid conjugal transfer protein precursorpB3 CDS12844 1731 + 0.679954
trbL TrbL plasmid conjugal transfer proteinpB3 mat_peptide12925 1647 + 0.686096
trbL pB3 sig_peptide12844 81 + 0.580247
trbM pB3_15 TrbM conjugal transfer protein precursorpB3 CDS14592 588 + 0.668367
trbM TrbM conjugal transfer proteinpB3 mat_peptide14664 513 + 0.670565
trbM pB3 sig_peptide14592 72 + 0.666667
trbN TrbN, putative muramidasepB3 CDS15193 636 + 0.690252
trbO TrbO conjugal transfer proteinpB3 CDS15857 267 + 0.640449
trbP TrbP conjugal transfer proteinpB3 CDS16123 699 + 0.680973
trfA replication initiation proteinpB3 CDS1492 1221 - 0.66421
upf30.5 pB3 sig_peptide16837 66 + 0.621212
upf30.5 putative outer membrane proteinpB3 mat_peptide16903 363 + 0.688705
upf30.5 putative outer membrane protein precursorpB3 CDS16837 432 + 0.675926
upf31.0 putative site-specific DNA-methyltransferasepB3 CDS17423 675 + 0.657778